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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_456524_460501_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
456524 - 460501
Intron Length:
3978

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGCACG
5'SS Class:
major
3'SS Sequence:
TTTTCTTCCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCATAAC
U12 Branch Point Sequence:
AGACTCATAACT
Flanking Amino Acid:
AGSYQGVPRIRSKADDLSTA
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
62.7
43.4
Major BPS
65.3
0.38
1.1
66.2
36.5
Major PPT
87.5
0.84
0.7
81.1
30.9
Minor 5ss
34.7
-1.7
2.8
42
44.3
Minor BPS
55.7
0.26
1.6
70.83
39.1

Associated Gene:

Gene:
VCP
Ensembl Gene ID:
ENSAPLG00000004533
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004747
455960 - 477162
21203