Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_460614_461003_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

460614 - 461003

Intron Length:

390

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGCGTCAT

5'SS Class:

strong_major

3'SS Sequence:

TTGTTGTTTATAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAATGAT

U12 Branch Point Sequence:

CTTTCTCTAATG

Flanking Amino Acid:

EDNSVVSLSQAKMDELQLFR

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.1

0.76

0.9

74.2

Major BPS

76.8

0.67

40.9

Major PPT

81.3

0.7

0.9

76.5

37.7

Minor 5ss

29.4

-2.4

3.1

40.5

45.6

Minor BPS

61.1

0.21

1.8

67.5

40.9

Associated Gene:

Gene:

VCP

Ensembl Gene ID:

ENSAPLG00000004533

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004747

455960 - 477162

21203