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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_4617756_4639543_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4617756 - 4639543
Intron Length:
21788

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGACT
5'SS Class:
strong_major
3'SS Sequence:
TTGATCCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TGTTCATTGATC
Flanking Amino Acid:
NSDSHLSFWQVGAQLLPCAP
Intron Amino Acid Position:
1422

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.98
0.8
85.2
31.7
Major BPS
83
0.82
0.8
82
24.9
Major PPT
72.5
0.51
0.9
65.7
36
Minor 5ss
34.9
-1.7
3.2
49.5
46.5
Minor BPS
66.6
0.5
1.6
75.86
34.2

Associated Gene:

Gene:
WDR7
Ensembl Gene ID:
ENSAPLG00000014993
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043521
4617370 - 4726132
108763