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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_46282602_46337905_R

Intron Information:

Intron Rank:
147527
Intron Class:
major
Intron Phase:
Intron Coordinates:
46282602 - 46337905
Intron Length:
55304

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
TTTTTCAGCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
79.7
33.4
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
94.8
1.01
0.5
92.6
17.3
Minor 5ss
46.5
-0.4
2.5
59.7
39.2
Minor BPS
48.1
-0
2.1
77.25
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026729
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036093
46281611 - 46338099
56489