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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_46376307_46376597_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46376307 - 46376597
Intron Length:
291

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TATTTCCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTGTTCTTATTT
Flanking Amino Acid:
KNAMVDPREERAVIPGPPFL
Intron Amino Acid Position:
536

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
86.9
22.7
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
84.2
0.77
0.8
78.4
30
Minor 5ss
45.5
-0.5
2.8
58.5
40.4
Minor BPS
69
0.67
1.5
83.01
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013999
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014592
46375363 - 46406313
30951