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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_46376756_46378611_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46376756 - 46378611
Intron Length:
1856

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCATTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TTTTTCTTCATT
Flanking Amino Acid:
VSRNAESDQQGVVQGIITGI
Intron Amino Acid Position:
483

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
80.5
33.9
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
81.5
0.71
0.8
82.9
27.3
Minor 5ss
36.6
-1.5
2.9
49.5
46.5
Minor BPS
73.4
0.82
1.7
91.07
32.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013999
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014592
46375363 - 46406313
30951