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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_46380675_46382733_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46380675 - 46382733
Intron Length:
2059

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTAAACT
Flanking Amino Acid:
VVGILSIIAQTVFLSVLMRS
Intron Amino Acid Position:
413

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
87.9
29.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
87.1
0.83
0.7
81.6
29.6
Minor 5ss
49.8
-0
2.8
73.2
43.7
Minor BPS
73.6
0.82
1.6
90.89
33.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013999
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014592
46375363 - 46406313
30951