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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_46382806_46383361_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46382806 - 46383361
Intron Length:
556

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGTT
5'SS Class:
strong_major
3'SS Sequence:
TGCTTCTCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
ATTTCTTTTATG
Flanking Amino Acid:
YSSFFLYLRQIIGFGSASIA
Intron Amino Acid Position:
389

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
87.7
26.2
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
79.4
0.66
0.8
77.7
31.2
Minor 5ss
38
-1.4
3.5
57.8
46.8
Minor BPS
63.8
0.29
1.7
69.21
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013999
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014592
46375363 - 46406313
30951