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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_46385131_46386880_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46385131 - 46386880
Intron Length:
1750

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGATAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGTACATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
ACTACTTAAACA
Flanking Amino Acid:
EHERITAYGRVSATFAASLV
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
72.1
34.3
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
72.6
0.51
0.9
68.8
36.3
Minor 5ss
37.8
-1.4
3
42.5
44.6
Minor BPS
57.3
0.23
1.7
65.99
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013999
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014592
46375363 - 46406313
30951