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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_465269_466800_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

465269 - 466800

Intron Length:

1532

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGCTGA

5'SS Class:

strong_major

3'SS Sequence:

TCCTTCCCGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTAAT

U12 Branch Point Sequence:

TATTTAATAATT

Flanking Amino Acid:

HCEGEPIKREDEEESLNEVG

Intron Amino Acid Position:

242

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.5

0.81

0.9

71.1

37.5

Major BPS

90.7

1.01

0.7

19.9

Major PPT

72.9

0.51

0.9

69.4

31.3

Minor 5ss

37.8

-1.4

47.1

48.3

Minor BPS

0.3

1.8

79.19

36.5

Associated Gene:

Gene:

VCP

Ensembl Gene ID:

ENSAPLG00000004533

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004747

455960 - 477162

21203