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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_4656722_4658015_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4656722 - 4658015
Intron Length:
1294

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATACAT
U12 Branch Point Sequence:
GTTGCATTACTT
Flanking Amino Acid:
LYDIRTGKCQLFTKQHDKAV
Intron Amino Acid Position:
1387

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.8
85.6
24.6
Major BPS
74.9
0.62
1
81.3
29.9
Major PPT
87.4
0.84
0.7
80.6
31.5
Minor 5ss
34.4
-1.8
2.8
41.8
44.8
Minor BPS
51.4
0.12
2
73.64
43.4

Associated Gene:

Gene:
WDR7
Ensembl Gene ID:
ENSAPLG00000014993
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015656
4656683 - 4726132
69450