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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_46593578_46598636_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46593578 - 46598636
Intron Length:
5059

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TATCTGTGTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
ACTTGTTTAATA
Flanking Amino Acid:
ASMMKKRTSHKKHRNNVGPS
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
81.6
33.2
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
74.4
0.55
1
68.4
41.9
Minor 5ss
43.6
-0.7
2.9
58.5
40.3
Minor BPS
61.5
0.36
1.7
68.85
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002923
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014507
46581075 - 46755987
174913
ENSAPLT00000002950
46581075 - 46602801
21727
ENSAPLT00000035089
46581075 - 46602801
21727