About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_46598891_46599862_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46598891 - 46599862
Intron Length:
972

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
GCTGTCATTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TGTTTTTTGAAT
Flanking Amino Acid:
SALEVLPDRVASSRISDAHL
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
87
27.7
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
74.7
0.56
0.9
70.2
40.1
Minor 5ss
38.8
-1.3
3.4
55
43.6
Minor BPS
65.7
0.57
1.4
80.23
35.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002923
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035089
46581075 - 46602801
21727
ENSAPLT00000014507
46581075 - 46755987
174913
ENSAPLT00000002950
46581075 - 46602801
21727