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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_46600097_46602601_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46600097 - 46602601
Intron Length:
2505

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTAGG
5'SS Class:
major
3'SS Sequence:
TTTTGTGTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAC
U12 Branch Point Sequence:
TTTACACTATTT
Flanking Amino Acid:
EGDLRIMPDSNDSPPAEREP
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.1
66.8
44.5
Major BPS
72.8
0.57
1
81
30.3
Major PPT
85.6
0.8
0.9
79.9
37.7
Minor 5ss
37.3
-1.4
2.7
48.1
41.6
Minor BPS
47.5
-0.1
2.1
74.98
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002923
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035089
46581075 - 46602801
21727
ENSAPLT00000014507
46581075 - 46755987
174913
ENSAPLT00000002950
46581075 - 46602801
21727