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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_4661215_4662642_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4661215 - 4662642
Intron Length:
1428

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTCT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTACATGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
ATTTTCTTAAAC
Flanking Amino Acid:
GLQECFPAICSYSHSKNDPA
Intron Amino Acid Position:
1353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
81.4
33.4
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
68.7
0.42
0.9
63.5
37.5
Minor 5ss
46.5
-0.4
2.8
65.7
45.4
Minor BPS
77.2
0.83
1.2
81.92
31.1

Associated Gene:

Gene:
WDR7
Ensembl Gene ID:
ENSAPLG00000014993
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046474
4660401 - 4726132
65732