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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_46621836_46628140_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46621836 - 46628140
Intron Length:
6305

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
TTTTTTCTCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTATTTTTAACT
Flanking Amino Acid:
LALPFHDPYRHDLKKKYNIT
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1
69
35.7
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
92.8
0.96
0.6
92.6
17.4
Minor 5ss
33.7
-1.9
2.7
43.9
37
Minor BPS
83.1
1.12
0.9
92.23
29.9

Associated Gene:

Gene:
NXNL2
Ensembl Gene ID:
ENSAPLG00000000870
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000848
46621534 - 46628309
6776