About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_4663220_4663982_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4663220 - 4663982
Intron Length:
763

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTTTGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTTGCATAAACC
Flanking Amino Acid:
PAFITTIAKEVHRHTALAAN
Intron Amino Acid Position:
1276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
42.7
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
70.4
0.46
1
65.3
41.1
Minor 5ss
37.8
-1.4
3
46.8
48.5
Minor BPS
57.7
0.22
2
75.46
41.2

Associated Gene:

Gene:
WDR7
Ensembl Gene ID:
ENSAPLG00000014993
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015656
4656683 - 4726132
69450
ENSAPLT00000043034
4636520 - 4726132
89613
ENSAPLT00000046474
4660401 - 4726132
65732
ENSAPLT00000042060
4636520 - 4726132
89613
ENSAPLT00000041973
4599925 - 4726132
126208
ENSAPLT00000043883
4636520 - 4726132
89613
ENSAPLT00000015663
4637127 - 4726132
89006
ENSAPLT00000043521
4617370 - 4726132
108763