About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_4664101_4672912_R

Intron Information:

Intron Rank:
21
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
4664101 - 4672912
Intron Length:
8812

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAGGTACC
5'SS Class:
major
3'SS Sequence:
GGTGCCCGTTTAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTCTTTCTCC
Flanking Amino Acid:
LCADAEKQLANITMGLPLSP
Intron Amino Acid Position:
1236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
72.7
35.1
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
59.5
0.21
1
55.1
41.3
Minor 5ss
37.3
-1.4
3
46.6
35.6
Minor BPS
46.6
-0.2
3.6
77.75
38.7

Associated Gene:

Gene:
WDR7
Ensembl Gene ID:
ENSAPLG00000014993
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015656
4656683 - 4726132
69450
ENSAPLT00000043034
4636520 - 4726132
89613
ENSAPLT00000042060
4636520 - 4726132
89613
ENSAPLT00000046474
4660401 - 4726132
65732
ENSAPLT00000041973
4599925 - 4726132
126208
ENSAPLT00000043883
4636520 - 4726132
89613
ENSAPLT00000015663
4637127 - 4726132
89006
ENSAPLT00000043521
4617370 - 4726132
108763