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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_467415_469118_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

467415 - 469118

Intron Length:

1704

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGCTTT

5'SS Class:

strong_major

3'SS Sequence:

TGCTATTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTGCTAT

U12 Branch Point Sequence:

TGCCACAGAGCT

Flanking Amino Acid:

ETGAFFFLINGPEIMSKLAG

Intron Amino Acid Position:

320

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.6

0.81

0.9

80.5

34.9

Major BPS

48.5

-0

1.4

47.8

45.7

Major PPT

83.2

0.75

0.8

80.5

36.8

Minor 5ss

49.9

-0

2.8

70.4

41.2

Minor BPS

40.6

-0.6

57.85

43.8

Associated Gene:

Gene:

VCP

Ensembl Gene ID:

ENSAPLG00000004533

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004747

455960 - 477162

21203