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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_46764234_46765423_R

Intron Information:

Intron Rank:
153653
Intron Class:
major
Intron Phase:
Intron Coordinates:
46764234 - 46765423
Intron Length:
1190

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAGGAAAA
5'SS Class:
major
3'SS Sequence:
TGATTCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTTACATGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1
69.6
36.5
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
82
0.72
0.9
73.5
41.6
Minor 5ss
31.5
-2.1
3.2
36.3
42
Minor BPS
62
0.46
1.8
85.36
34.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030159
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037930
46762621 - 46772634
10014