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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_46798808_46801021_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46798808 - 46801021
Intron Length:
2214

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTGAGTTCC
5'SS Class:
major
3'SS Sequence:
TTTCTATAACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
ATTTCTATAACC
Flanking Amino Acid:
SSPEKDLFDMKPFEDALKNQ
Intron Amino Acid Position:
492

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1
65.6
35.1
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
73.7
0.53
1
67.9
41.7
Minor 5ss
37.3
-1.4
2.8
41.6
38.8
Minor BPS
72.3
0.68
1.5
81.87
31.4

Associated Gene:

Gene:
SHC3
Ensembl Gene ID:
ENSAPLG00000013246
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013803
46795002 - 46853850
58849