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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_46802235_46803374_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46802235 - 46803374
Intron Length:
1140

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCGGTGCC
5'SS Class:
major
3'SS Sequence:
GTGTCCATTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTACAT
U12 Branch Point Sequence:
TTTCTTTGTACA
Flanking Amino Acid:
RIPTAADTAQSAAGVGRERI
Intron Amino Acid Position:
395

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.3
70.3
35.3
Major BPS
67.6
0.44
1.2
75
40
Major PPT
68.9
0.43
0.9
59.6
41.6
Minor 5ss
28
-2.5
3.2
36
40.9
Minor BPS
50.6
0.01
1.8
68.94
36.8

Associated Gene:

Gene:
SHC3
Ensembl Gene ID:
ENSAPLG00000013246
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013803
46795002 - 46853850
58849