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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_46804768_46809308_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46804768 - 46809308
Intron Length:
4541

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCATGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTGATTTGAATG
Flanking Amino Acid:
YVAKDPVNRRACHILECCDG
Intron Amino Acid Position:
301

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.6
1.07
0.7
84
30.2
Major BPS
100
1.24
0.5
100
0
Major PPT
81.3
0.7
0.8
78
29.6
Minor 5ss
39.5
-1.2
2.8
48.7
47.5
Minor BPS
50.7
-0.1
1.5
56.06
40.1

Associated Gene:

Gene:
SHC3
Ensembl Gene ID:
ENSAPLG00000013246
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013803
46795002 - 46853850
58849