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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_46813505_46816724_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46813505 - 46816724
Intron Length:
3220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CTGATCCATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTCTTCTGATCC
Flanking Amino Acid:
LNLMTPDTKQIIANHHMQSI
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.7
80.2
27.1
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
69
0.43
1
61.9
39
Minor 5ss
27.5
-2.6
3
32.5
42.3
Minor BPS
58
0.23
1.7
70.59
40.9

Associated Gene:

Gene:
SHC3
Ensembl Gene ID:
ENSAPLG00000013246
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013803
46795002 - 46853850
58849