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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_46816845_46819455_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46816845 - 46819455
Intron Length:
2611

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTTTC
5'SS Class:
major
3'SS Sequence:
TTCTCCCTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACAAAA
U12 Branch Point Sequence:
TTCTCCCTCACA
Flanking Amino Acid:
GAKGAFKKRKPPSKVLSSIL
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
76.8
32.7
Major BPS
51.5
0.04
0.9
57.3
24.9
Major PPT
81.7
0.71
0.7
76.1
26
Minor 5ss
53.3
0.11
2.3
70.3
40.3
Minor BPS
59.1
0.28
2.1
75.88
41.5

Associated Gene:

Gene:
SHC3
Ensembl Gene ID:
ENSAPLG00000013246
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013803
46795002 - 46853850
58849