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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_4681982_4694059_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4681982 - 4694059
Intron Length:
12078

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCACC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCCTCATCC
Flanking Amino Acid:
HDLVDDDITAGCLSGLPQMK
Intron Amino Acid Position:
1100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.9
35.3
Major BPS
100
1.24
0.5
100
0
Major PPT
87.8
0.85
0.7
85.6
27.3
Minor 5ss
35.2
-1.7
2.8
43.7
43.7
Minor BPS
69
0.58
1.8
82.93
36.8

Associated Gene:

Gene:
WDR7
Ensembl Gene ID:
ENSAPLG00000014993
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041973
4599925 - 4726132
126208
ENSAPLT00000043883
4636520 - 4726132
89613
ENSAPLT00000015663
4637127 - 4726132
89006
ENSAPLT00000043521
4617370 - 4726132
108763
ENSAPLT00000015656
4656683 - 4726132
69450
ENSAPLT00000043034
4636520 - 4726132
89613
ENSAPLT00000042060
4636520 - 4726132
89613
ENSAPLT00000046474
4660401 - 4726132
65732