Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_46829979_46853310_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

46829979 - 46853310

Intron Length:

23332

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTTGGTCGG

5'SS Class:

major

3'SS Sequence:

TTTTTCCTTACAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCAACAG

U12 Branch Point Sequence:

TTTTCCTTACAG

Flanking Amino Acid:

LGPGVTYIVKYLGCIEVLRS

Intron Amino Acid Position:

181

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.8

0.47

1.3

55.7

48.6

Major BPS

43.9

-0.3

1.5

51.3

42.7

Major PPT

93.4

0.98

0.6

88.4

21.4

Minor 5ss

28.6

-2.5

2.9

33.1

41.8

Minor BPS

68.9

0.46

1.8

76.73

40.6

Associated Gene:

Gene:

SHC3

Ensembl Gene ID:

ENSAPLG00000013246

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013803

46795002 - 46853850

58849