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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_46890331_46891400_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46890331 - 46891400
Intron Length:
1070

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CTTTGTTCAATT
Flanking Amino Acid:
GWVHYMIHEPEPHILLFRRP
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.93
0.8
82.4
29.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
89.5
0.89
0.7
85.1
29.5
Minor 5ss
36.2
-1.6
2.6
40.7
39.2
Minor BPS
54.4
0.22
2
75.4
42.3

Associated Gene:

Gene:
CKS2
Ensembl Gene ID:
ENSAPLG00000013196
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013733
46889307 - 46891453
2147