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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_46892596_46893004_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46892596 - 46893004
Intron Length:
409

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCCG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAA
U12 Branch Point Sequence:
GTAGCCTAAAAA
Flanking Amino Acid:
RWPAPLRGAEGVQLSAEVEP
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
63.1
43
Major BPS
76.9
0.67
0.8
77.7
26.1
Major PPT
87.7
0.85
0.7
81.2
36.5
Minor 5ss
25.6
-2.8
3
30.2
43
Minor BPS
50.4
0.01
1.9
62.34
43.4

Associated Gene:

Gene:
SECISBP2
Ensembl Gene ID:
ENSAPLG00000013053
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019249
46891401 - 46914075
22675