Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_46895071_46895505_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

46895071 - 46895505

Intron Length:

435

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATAAATT

5'SS Class:

major

3'SS Sequence:

ATGCTTTATTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAC

U12 Branch Point Sequence:

ATTTTTTTGACT

Flanking Amino Acid:

TAWSRDSMKPDSYNKTTSKK

Intron Amino Acid Position:

161

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.5

0.65

79.6

33.3

Major BPS

86.5

0.91

0.8

77.4

37.4

Major PPT

76.1

0.59

74.1

40.1

Minor 5ss

44.9

-0.6

66.2

44.9

Minor BPS

77.4

0.94

88.54

29.3

Associated Gene:

Gene:

SECISBP2

Ensembl Gene ID:

ENSAPLG00000013053

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019249

46891401 - 46914075

22675

ENSAPLT00000013604

46893062 - 46914075

21014