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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_46902218_46902874_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46902218 - 46902874
Intron Length:
657

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTACTGCTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTCTTTTTACT
Flanking Amino Acid:
LTPAVKKEVEAVEVMVIAQA
Intron Amino Acid Position:
402

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
89.8
22.2
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
67.2
0.39
1.1
64.5
41.6
Minor 5ss
39.1
-1.2
2.8
51.7
39.1
Minor BPS
66.3
0.59
1.6
84.95
35.1

Associated Gene:

Gene:
SECISBP2
Ensembl Gene ID:
ENSAPLG00000013053
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013604
46893062 - 46914075
21014