Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_46909056_46909718_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

46909056 - 46909718

Intron Length:

663

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATCTTTC

5'SS Class:

weak_major

3'SS Sequence:

ATTTATGTGATAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TGTCTTTTAATT

Flanking Amino Acid:

GEPLPQASEAAVPVMQVTEG

Intron Amino Acid Position:

620

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.61

1.1

74.9

36.3

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

65.9

0.36

1.1

61.9

43.7

Minor 5ss

72.3

0.75

1.7

78.8

35.5

Minor BPS

71.4

0.75

1.1

81.54

33.9

Associated Gene:

Gene:

SECISBP2

Ensembl Gene ID:

ENSAPLG00000013053

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019249

46891401 - 46914075

22675

ENSAPLT00000013604

46893062 - 46914075

21014