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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_46909861_46910965_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46909861 - 46910965
Intron Length:
1105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
TTATTTCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TAACATTTAATT
Flanking Amino Acid:
LPKIHSRRFRDYCSQVLSKE
Intron Amino Acid Position:
667

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
72.6
37.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
88.7
0.87
0.7
81.4
36
Minor 5ss
38.3
-1.3
2.7
43.9
37
Minor BPS
60.3
0.4
1.5
72.78
37.7

Associated Gene:

Gene:
SECISBP2
Ensembl Gene ID:
ENSAPLG00000013053
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019249
46891401 - 46914075
22675
ENSAPLT00000013604
46893062 - 46914075
21014