About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_46938953_46939384_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46938953 - 46939384
Intron Length:
432

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAG
U12 Branch Point Sequence:
TCTTACTTAAAT
Flanking Amino Acid:
TIYDVMFISTDQGALHKAIS
Intron Amino Acid Position:
440

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
77.5
33.5
Major BPS
75.6
0.64
1.5
84
34.5
Major PPT
85.7
0.8
0.8
83.9
31.1
Minor 5ss
37
-1.5
2.9
42.4
44.3
Minor BPS
72.4
0.78
1.6
86.49
39

Associated Gene:

Gene:
SEMA4D
Ensembl Gene ID:
ENSAPLG00000012901
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044446
46917337 - 46960006
42670
ENSAPLT00000023003
46932266 - 46960006
27741
ENSAPLT00000013458
46917337 - 46960006
42670