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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_46939608_46940364_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46939608 - 46940364
Intron Length:
757

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTTTC
5'SS Class:
major
3'SS Sequence:
TTTTAAATACTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TCTTTTTTAATT
Flanking Amino Acid:
GEIPNPRPGACINNEARASN
Intron Amino Acid Position:
366

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
76.3
34
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
68.5
0.42
1
61.6
43.3
Minor 5ss
47
-0.3
2.8
67.3
37.5
Minor BPS
78.6
0.98
1
86.64
33.8

Associated Gene:

Gene:
SEMA4D
Ensembl Gene ID:
ENSAPLG00000012901
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044446
46917337 - 46960006
42670
ENSAPLT00000023003
46932266 - 46960006
27741
ENSAPLT00000013458
46917337 - 46960006
42670