About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_46940522_46940628_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46940522 - 46940628
Intron Length:
107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTGTG
5'SS Class:
major
3'SS Sequence:
CCTGTACTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TCTTCCTGTACT
Flanking Amino Acid:
PVIYGVFTPQLNNVGLSAVC
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.1
69.5
41.3
Major BPS
80
0.75
1
78.6
31
Major PPT
72.5
0.51
0.9
66.1
34.8
Minor 5ss
39.2
-1.2
3.4
59.1
45.3
Minor BPS
67.3
0.62
1.8
85.14
41.1

Associated Gene:

Gene:
SEMA4D
Ensembl Gene ID:
ENSAPLG00000012901
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044446
46917337 - 46960006
42670
ENSAPLT00000023003
46932266 - 46960006
27741
ENSAPLT00000013458
46917337 - 46960006
42670