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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_4694174_4710626_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4694174 - 4710626
Intron Length:
16453

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAATG
5'SS Class:
strong_major
3'SS Sequence:
GTTATTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTTAT
U12 Branch Point Sequence:
TTTGCTGTTATT
Flanking Amino Acid:
SHAAQGQIKQAGVTTEAIQT
Intron Amino Acid Position:
951

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
77.9
36.7
Major BPS
69
0.47
1.2
61.1
45.5
Major PPT
87
0.83
0.8
84.7
35.8
Minor 5ss
36.4
-1.5
3.1
48.5
47.2
Minor BPS
47.8
-0
2.3
74.98
42.6

Associated Gene:

Gene:
WDR7
Ensembl Gene ID:
ENSAPLG00000014993
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015663
4637127 - 4726132
89006