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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_46942471_46943799_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46942471 - 46943799
Intron Length:
1329

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTATCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
TAATATAAAATT
Flanking Amino Acid:
RTEYAIPWLNEPNFVFADVV
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
68.8
42.2
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
80.6
0.69
0.8
78.8
34.8
Minor 5ss
32.2
-2
3.1
37.3
42.5
Minor BPS
44.9
-0.3
2
63.88
40.4

Associated Gene:

Gene:
SEMA4D
Ensembl Gene ID:
ENSAPLG00000012901
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044446
46917337 - 46960006
42670
ENSAPLT00000023003
46932266 - 46960006
27741
ENSAPLT00000013458
46917337 - 46960006
42670