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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_47048585_47048694_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47048585 - 47048694
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTAGC
5'SS Class:
major
3'SS Sequence:
TCCCCCTTCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACTGAC
U12 Branch Point Sequence:
GCTGACTGACCG
Flanking Amino Acid:
GQEPVPAGSDWMQGAGKALH
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
68.8
42.2
Major BPS
55.9
0.15
1.2
49
38
Major PPT
77.1
0.61
0.7
71.8
26.2
Minor 5ss
34.8
-1.7
3
42.1
39.8
Minor BPS
42.5
-0.7
2
45.75
46.2

Associated Gene:

Gene:
GADD45G
Ensembl Gene ID:
ENSAPLG00000024935
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026955
47048295 - 47050153
1859