About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_47048797_47048882_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
47048797 - 47048882
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTAGG
5'SS Class:
major
3'SS Sequence:
TCGCCTCTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTAAC
U12 Branch Point Sequence:
AGAGCCTAACCT
Flanking Amino Acid:
GVYESAKLMNVDPDNVAFCV
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.1
65.7
45.7
Major BPS
54.3
0.11
1.2
57.5
37.5
Major PPT
78.8
0.65
0.8
72.7
32
Minor 5ss
37.1
-1.5
2.8
43.3
43.7
Minor BPS
47.1
-0.1
2
63.75
46.2

Associated Gene:

Gene:
GADD45G
Ensembl Gene ID:
ENSAPLG00000024935
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026955
47048295 - 47050153
1859