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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_47049097_47049458_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47049097 - 47049458
Intron Length:
362

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGGGTGTC
5'SS Class:
major
3'SS Sequence:
TTCCCTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TGGTGTGCAACT
Flanking Amino Acid:
PRDLHCILITNPNEDGWKDP
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1
67
39
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
85.5
0.8
0.7
80.4
24.9
Minor 5ss
30.9
-2.2
3.5
43.2
44.5
Minor BPS
42.9
-0.4
2.4
64.33
46.2

Associated Gene:

Gene:
GADD45G
Ensembl Gene ID:
ENSAPLG00000024935
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026955
47048295 - 47050153
1859