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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_4710719_4711229_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4710719 - 4711229
Intron Length:
511

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGAAA
5'SS Class:
strong_major
3'SS Sequence:
ATGTTATGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTTAT
U12 Branch Point Sequence:
TCCCCCTCATGC
Flanking Amino Acid:
IGDHMKKGPTRPPRPGTPEM
Intron Amino Acid Position:
920

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
75.1
36.6
Major BPS
72.5
0.56
1.2
63.4
44
Major PPT
69
0.43
1
67.2
43.4
Minor 5ss
30.5
-2.2
3.3
39.1
46.3
Minor BPS
43.8
-0.4
2
51.6
45.5

Associated Gene:

Gene:
WDR7
Ensembl Gene ID:
ENSAPLG00000014993
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015656
4656683 - 4726132
69450
ENSAPLT00000043034
4636520 - 4726132
89613
ENSAPLT00000046474
4660401 - 4726132
65732
ENSAPLT00000042060
4636520 - 4726132
89613
ENSAPLT00000041973
4599925 - 4726132
126208
ENSAPLT00000043883
4636520 - 4726132
89613
ENSAPLT00000015663
4637127 - 4726132
89006
ENSAPLT00000043521
4617370 - 4726132
108763