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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_471298_471951_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

471298 - 471951

Intron Length:

654

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGCAGA

5'SS Class:

strong_major

3'SS Sequence:

GCTTTGCTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GAGTCAT

U12 Branch Point Sequence:

GTCCCTGTGAGT

Flanking Amino Acid:

KLADDVDLEQVANETHGHVG

Intron Amino Acid Position:

448

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.3

0.83

0.9

74.1

38.4

Major BPS

59.3

0.23

1.4

63.4

44.3

Major PPT

80.7

0.69

0.9

76.9

37.3

Minor 5ss

33.3

-1.9

2.8

45.7

Minor BPS

43.5

-0.4

2.2

60.69

43.5

Associated Gene:

Gene:

VCP

Ensembl Gene ID:

ENSAPLG00000004533

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004747

455960 - 477162

21203