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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_4713404_4714072_R

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
4713404 - 4714072
Intron Length:
669

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGCTTC
5'SS Class:
strong_major
3'SS Sequence:
AAAACGTTTGAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
CTTTCCAAAACG
Flanking Amino Acid:
GSVYVWQMDTGALDRCVMGI
Intron Amino Acid Position:
592

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
73.5
38.6
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
52.2
0.05
1.2
49.4
43
Minor 5ss
48.9
-0.1
2.8
68.8
42.1
Minor BPS
56
0.05
2.1
68.11
45.3

Associated Gene:

Gene:
WDR7
Ensembl Gene ID:
ENSAPLG00000014993
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041973
4599925 - 4726132
126208
ENSAPLT00000043883
4636520 - 4726132
89613
ENSAPLT00000015663
4637127 - 4726132
89006
ENSAPLT00000043521
4617370 - 4726132
108763
ENSAPLT00000015656
4656683 - 4726132
69450
ENSAPLT00000043034
4636520 - 4726132
89613
ENSAPLT00000042060
4636520 - 4726132
89613
ENSAPLT00000046474
4660401 - 4726132
65732