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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_47172978_47177743_R

Intron Information:

Intron Rank:
132979
Intron Class:
major
Intron Phase:
Intron Coordinates:
47172978 - 47177743
Intron Length:
4766

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGTC
5'SS Class:
strong_major
3'SS Sequence:
TTCAATCTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTCAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
81.9
31.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
75
0.56
0.9
68.4
37
Minor 5ss
33.8
-1.8
3.7
49.2
47.3
Minor BPS
59.5
0.28
1.5
70.64
34.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018765
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026708
47172866 - 47179176
6311