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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_4720276_4721871_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4720276 - 4721871
Intron Length:
1596

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTGTATTTATCA
Flanking Amino Acid:
MTIIKSNRTQEDTVVAVSVT
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
93.3
21.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
87.9
0.85
0.6
81.4
30.6
Minor 5ss
41
-1
3
59.7
44.8
Minor BPS
59
0.28
1.8
71.96
40.4

Associated Gene:

Gene:
WDR7
Ensembl Gene ID:
ENSAPLG00000014993
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015656
4656683 - 4726132
69450
ENSAPLT00000043034
4636520 - 4726132
89613
ENSAPLT00000042060
4636520 - 4726132
89613
ENSAPLT00000046474
4660401 - 4726132
65732
ENSAPLT00000041973
4599925 - 4726132
126208
ENSAPLT00000043883
4636520 - 4726132
89613
ENSAPLT00000015663
4637127 - 4726132
89006
ENSAPLT00000043521
4617370 - 4726132
108763