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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_472117_472221_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
472117 - 472221
Intron Length:
105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAATGCAA
5'SS Class:
major
3'SS Sequence:
CTTCTAACAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTCTTCTAACA
Flanking Amino Acid:
SLAVTMDDFRWALSQSNPSA
Intron Amino Acid Position:
503

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.1
58.6
42
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
69.2
0.43
1
63.7
35.8
Minor 5ss
29.7
-2.3
3.2
30.2
42.9
Minor BPS
63.1
0.41
1.6
77.1
33.3

Associated Gene:

Gene:
VCP
Ensembl Gene ID:
ENSAPLG00000004533
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004747
455960 - 477162
21203