About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_472345_473346_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
472345 - 473346
Intron Length:
1002

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCCTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
ATCACGAGAATT
Flanking Amino Acid:
VKRELQELVQYPVEHPDKFL
Intron Amino Acid Position:
544

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
93.7
19.9
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
82.4
0.73
0.7
78.1
23.8
Minor 5ss
39.4
-1.2
3.1
57.6
46.6
Minor BPS
41.8
-0.5
2.3
61
42.7

Associated Gene:

Gene:
VCP
Ensembl Gene ID:
ENSAPLG00000004533
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004747
455960 - 477162
21203