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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_47280060_47280246_F

Intron Information:

Intron Rank:
128478
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
47280060 - 47280246
Intron Length:
187

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTTA
5'SS Class:
strong_major
3'SS Sequence:
TCAATGTGAGAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTTTTCTCAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
86
25
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
49.1
-0
1.2
49.3
42.7
Minor 5ss
43.8
-0.7
2.8
58.6
45.8
Minor BPS
69.8
0.48
1.5
75.15
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019201
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023414
47279927 - 47283687
3761