Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_47280348_47283403_F

Intron Information:

Intron Rank:

128479

Intron Class:

major

Intron Phase:

Intron Coordinates:

47280348 - 47283403

Intron Length:

3056

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAATGACA

5'SS Class:

strong_major

3'SS Sequence:

TTTACCTTCTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAC

U12 Branch Point Sequence:

TTCTTTTTACCT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.5

0.72

74.2

35.8

Major BPS

86.6

0.91

0.8

77.7

36.7

Major PPT

83.1

0.74

0.8

30.8

Minor 5ss

32.6

-2

3.1

41.2

44.8

Minor BPS

67.3

0.62

1.6

82.56

39.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019201

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023414

47279927 - 47283687

3761